EPI2ME 는 oxford 회사에서 nanopore sequencing 결과물을 리포팅해주는 웹페이지이다.
크게 1. 16S analysis workflow 2. WIMP(What`s in my pot?) workflow 분석을 제공하고 있다.
| 16S analysis | WIMP | |
| target | bacteria, archiea | bacteria, virus, fungi, etc |
| taxonomic classification tool | centrifuge | |
| Dastabase | NCBI bacterial 16S database (link) | RefSeq database |
1. 16S analysis workflow : https://nanoporetech.com/analyse/16s
2. Q&A : https://nanoporetech.com/events/bioinformatics-101-online-event-qa
'Bioinfomatics > microbiome' 카테고리의 다른 글
| [CONCEPT] Rarefraction curve (0) | 2023.02.16 |
|---|---|
| [microbiome] long-read seq(nanopore, MinION) 16S rRNA analysis (진행중) (0) | 2022.08.23 |
| short-read metagenomics - step4. Taxonomic classification (0) | 2022.07.13 |
| short-read metagenomics - step3. contig binning (0) | 2022.07.13 |
| short-read metagenomics - step2. gene prediction (0) | 2022.07.13 |
